2011

• Analysis of protein-protein interaction networks, Workshop on Introduction to Mathematical Techniques in Life Sciences, Indian Institute of Science, Bengaluru, India, January 12, 2011 (Invited).


• Integrative -omics for translational science, Pacific Symposium on Biocomputing, Kamuela, HI, January 3, 2011 (Contributed Tutorial, with Gurkan Bebek, Nathan Price, and Mark Chance).

2010

• Subnetwork state functions define dysregulated subnetworks in cancer, RECOMB'10, Lisboa, Portugal, August 12, 2010 (Contributed). pdf


• Role of centrality in network based prioritization of disease genes, EvoBIO'10, Istanbul, Turkey, April 8, 2010 (Contributed, Best Paper Award). pdf


• Integrative -omics for systems biology of complex phenotypes, Bahcesehir University, Department of Computer Engineering, Istanbul, Turkey, April 7, 2010 (Invited). pdf


• Identification of coordinately dysregulated subnetworks in complex phenotypes, Pacific Symposium on Biocomputing, Kamuela, HI, January 8, 2010 (Contributed). pdf

2009

• Network algorithms for the identification of disease genes, Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH, November 16, 2009 (Invited).


• Identification of coordinately dysregulated subnetworks in human colorectal cancer, "Proteomics Workshop: From Proteomics to Biological Networks", Case Center for Proteomics and Bioinformatics, Cleveland, OH, November 5, 2009 (Internal Speaker).


• Identification of coordinately dysregulated subnetworks in human colorectal cancer, Symposium on Understanding Protein Complexes, Networks and the Interactome, Case Center for Proteomics and Bioinformatics, Cleveland, OH, October 19, 2009 (Internal Speaker). Panel Discussion

2008

• Functional characterization of molecular interaction networks, Case Western Reserve University, Department of Electrical Engineering & Computer Science, Cleveland, OH, October 23, 2008 (Colloquium).


• Functional characterization of molecular interaction networks, Texas Tech University, Department of Computer Science, Lubbock, TX, October 21, 2008 (Invited). pdf


• Functional coherence in molecular interaction networks, Kent State University, Department of Computer Science, Kent, OH, October 1, 2008 (Invited). pdf


• Functional coherence in molecular interaction networks, BICI Workshop on Modeling, Analysis, & Integration of Biological Networks (organized by R. Pinter & S. Batzoglou), Bertinoro, Italy, September 19, 2008 (Invited).


• Phylogenetic analysis of molecular interaction networks, Minisymposium on Algorithms for Systems Biology (organized by C. Sahinalp), SIAM Conference on Discrete Mathematics, Burlington, VT, June 18, 2008 (Invited). pdf

2007

• Discovering commonalities in interaction networks: from alignment to canonical modules, Mathematics for Biological Networks, Institut Henri Poincare, Paris, France, December 17, 2007 (Invited). pdf


• Discovering commonalities in interaction networks: from alignment to canonical modules, Case Center for Proteomics and Bioinformatics, Cleveland, OH, December 6, 2007 (Invited).


• Functional annotation of regulatory pathways, ISMB'07, Wien, Austria, July 22, 2007 (Contributed). pdf


• Algorithmic and analytical methods for functional characterization of molecular interaction networks, Invited Session on Biological Networks (organized by N. Przulj), Interface'07:Systems Biology, Philadelphia, PA, May 25, 2007 (Invited). pdf


• A statistical model for functional characterization of regulatory pathways, Workshop on Data Mining for Biomedical Informatics, SIAM DM'07, Minneapolis, MN, April 28, 2007 (Contributed).


• Comparative analysis of molecular interaction networks, Department of Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH, February 6, 2007 (Invited). pdf

2006 and Before

• Comparative analysis of biological networks, Ph.D. defense, Department of Computer Science, Purdue University, West Lafayette, IN, August 23, 2006 (Dissertation). pdf


• Assessing significance of connectivity and conservation in protein interaction networks, RECOMB'06, Venezia, Italy, April 2, 2006 (Contributed). pdf


• Pairwise local alignment of protein interaction networks guided by models of evolution, RECOMB'05, Boston, MA, May 15, 2005 (Contributed). pdf


• An efficient algorithm for detecting frequent subgraphs in biological networks, ISMB/ECCB'04, Glasgow, UK, August 4, 2004 (Contributed). pdf


• Proximus: A framework for analysis of very high dimensional discrete attributed datasets, KDD'03, Washington DC, August 26, 2003 (Contributed). pdf